chore: update agent tool definitions with vsc-native identifiers

- Replaced deprecated generic tool names with specific VS Code command IDs
- Enabled broad MCP tool access for Management and QA agents
- Scoped DevOps agent to strictly infrastructure and release tools
- aligned Playwright and Trivy tool usage with new MCP namespaces

.github/agents/Backend_Dev.agent.md

@@ -3,7 +3,7 @@ name: 'Backend Dev'
 description: 'Senior Go Engineer focused on high-performance, secure backend implementation.'
 argument-hint: 'The specific backend task from the Plan (e.g., "Implement ProxyHost CRUD endpoints")'
 tools:
-  ['execute', 'read', 'agent', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'search', 'todo']
+  ['agent', 'execute', 'read', 'search', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'todo', 'vscode/runCommand']
 model: 'Cloaude Sonnet 4.5'
 ---
 You are a SENIOR GO BACKEND ENGINEER specializing in Gin, GORM, and System Architecture.
@@ -65,5 +65,3 @@ Your priority is writing code that is clean, tested, and secure by default.
 - **NO CONVERSATION**: If the task is done, output "DONE". If you need info, ask the specific question.
 - **USE DIFFS**: When updating large files (>100 lines), use `sed` or `replace_string_in_file` tools if available. If re-writing the file, output ONLY the modified functions/blocks.
 </constraints>
-
-```

.github/agents/DevOps.agent.md

@@ -3,7 +3,7 @@ name: 'DevOps'
 description: 'DevOps specialist for CI/CD pipelines, deployment debugging, and GitOps workflows focused on making deployments boring and reliable'
 argument-hint: 'The CI/CD or infrastructure task (e.g., "Debug failing GitHub Action workflow")'
 tools:
-  ['execute', 'read', 'agent', 'github/*', 'github/*', 'io.github.goreleaser/mcp/*', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'search', 'web', 'github/*', 'todo', 'ms-azuretools.vscode-containers/containerToolsConfig']
+  ['agent', 'execute', 'read', 'search', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'todo', 'vscode/runCommand', 'vscode/extensions', 'vscode/installExtension', 'vscode/getProjectSetupInfo', 'web', 'github/*', 'io.github.goreleaser/mcp/*', 'ms-azuretools.vscode-containers/containerToolsConfig', 'github.vscode-pull-request-github/*']
 model: 'Cloaude Sonnet 4.5'
 mcp-servers:
   - github
@@ -248,5 +248,3 @@ git revert HEAD && git push
 ```
 
 Remember: The best deployment is one nobody notices. Automation, monitoring, and quick recovery are key.
-
-````

.github/agents/Doc_Writer.agent.md

@@ -3,7 +3,7 @@ name: 'Docs Writer'
 description: 'User Advocate and Writer focused on creating simple, layman-friendly documentation.'
 argument-hint: 'The feature to document (e.g., "Write the guide for the new Real-Time Logs")'
 tools:
-  ['read/getNotebookSummary', 'read/problems', 'read/readFile', 'read/readNotebookCellOutput', 'read/terminalSelection', 'read/terminalLastCommand', 'read/getTaskOutput', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'search/changes', 'search/codebase', 'search/fileSearch', 'search/listDirectory', 'search/searchResults', 'search/textSearch', 'search/usages', 'search/searchSubagent', 'web/fetch', 'github/add_comment_to_pending_review', 'github/add_issue_comment', 'github/assign_copilot_to_issue', 'github/create_branch', 'github/create_or_update_file', 'github/create_pull_request', 'github/create_repository', 'github/delete_file', 'github/fork_repository', 'github/get_commit', 'github/get_file_contents', 'github/get_label', 'github/get_latest_release', 'github/get_me', 'github/get_release_by_tag', 'github/get_tag', 'github/get_team_members', 'github/get_teams', 'github/issue_read', 'github/issue_write', 'github/list_branches', 'github/list_commits', 'github/list_issue_types', 'github/list_issues', 'github/list_pull_requests', 'github/list_releases', 'github/list_tags', 'github/merge_pull_request', 'github/pull_request_read', 'github/pull_request_review_write', 'github/push_files', 'github/request_copilot_review', 'github/search_code', 'github/search_issues', 'github/search_pull_requests', 'github/search_repositories', 'github/search_users', 'github/sub_issue_write', 'github/update_pull_request', 'github/update_pull_request_branch', 'github/add_comment_to_pending_review', 'github/add_issue_comment', 'github/assign_copilot_to_issue', 'github/create_branch', 'github/create_or_update_file', 'github/create_pull_request', 'github/create_repository', 'github/delete_file', 'github/fork_repository', 'github/get_commit', 'github/get_file_contents', 'github/get_label', 'github/get_latest_release', 'github/get_me', 'github/get_release_by_tag', 'github/get_tag', 'github/get_team_members', 'github/get_teams', 'github/issue_read', 'github/issue_write', 'github/list_branches', 'github/list_commits', 'github/list_issue_types', 'github/list_issues', 'github/list_pull_requests', 'github/list_releases', 'github/list_tags', 'github/merge_pull_request', 'github/pull_request_read', 'github/pull_request_review_write', 'github/push_files', 'github/request_copilot_review', 'github/search_code', 'github/search_issues', 'github/search_pull_requests', 'github/search_repositories', 'github/search_users', 'github/sub_issue_write', 'github/update_pull_request', 'github/update_pull_request_branch', 'github/add_comment_to_pending_review', 'github/add_issue_comment', 'github/assign_copilot_to_issue', 'github/create_branch', 'github/create_or_update_file', 'github/create_pull_request', 'github/create_repository', 'github/delete_file', 'github/fork_repository', 'github/get_commit', 'github/get_file_contents', 'github/get_label', 'github/get_latest_release', 'github/get_me', 'github/get_release_by_tag', 'github/get_tag', 'github/get_team_members', 'github/get_teams', 'github/issue_read', 'github/issue_write', 'github/list_branches', 'github/list_commits', 'github/list_issue_types', 'github/list_issues', 'github/list_pull_requests', 'github/list_releases', 'github/list_tags', 'github/merge_pull_request', 'github/pull_request_read', 'github/pull_request_review_write', 'github/push_files', 'github/request_copilot_review', 'github/search_code', 'github/search_issues', 'github/search_pull_requests', 'github/search_repositories', 'github/search_users', 'github/sub_issue_write', 'github/update_pull_request', 'github/update_pull_request_branch', 'vscode.mermaid-chat-features/renderMermaidDiagram', 'todo']
+  ['agent', 'read', 'search', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'todo', 'web', 'vscode/openSimpleBrowser', 'github/*', 'vscode.mermaid-chat-features/renderMermaidDiagram', 'github.vscode-pull-request-github/*']
 model: 'Cloaude Sonnet 4.5'
 mcp-servers:
   - github

.github/agents/Frontend_Dev.agent.md

@@ -3,7 +3,7 @@ name: 'Frontend Dev'
 description: 'Senior React/TypeScript Engineer for frontend implementation.'
 argument-hint: 'The frontend feature or component to implement (e.g., "Implement the Real-Time Logs dashboard component")'
 tools:
-  ['vscode', 'execute', 'read', 'agent', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'search', 'todo']
+  ['agent', 'execute', 'read', 'search', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'todo', 'web', 'vscode/runCommand']
 model: 'Cloaude Sonnet 4.5'
 ---
 You are a SENIOR REACT/TYPESCRIPT ENGINEER with deep expertise in:

.github/agents/Management.agent.md

@@ -3,7 +3,7 @@ name: 'Management'
 description: 'Engineering Director. Delegates ALL research and execution. DO NOT ask it to debug code directly.'
 argument-hint: 'The high-level goal (e.g., "Build the new Proxy Host Dashboard widget")'
 tools:
-  ['vscode', 'execute', 'read', 'agent', 'edit', 'search', 'web', 'github/*', 'github/*', 'github/*', 'io.github.goreleaser/mcp/*', 'playwright/*', 'trivy-mcp/*', 'playwright/*', 'vscode.mermaid-chat-features/renderMermaidDiagram', 'github.vscode-pull-request-github/issue_fetch', 'github.vscode-pull-request-github/suggest-fix', 'github.vscode-pull-request-github/searchSyntax', 'github.vscode-pull-request-github/doSearch', 'github.vscode-pull-request-github/renderIssues', 'github.vscode-pull-request-github/activePullRequest', 'github.vscode-pull-request-github/openPullRequest', 'ms-azuretools.vscode-containers/containerToolsConfig', 'todo']
+  ['agent', 'edit', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'execute', 'read', 'search', 'todo', 'vscode', 'vscode/askQuestions', 'vscode/extensions', 'vscode/getProjectSetupInfo', 'vscode/installExtension', 'vscode/openSimpleBrowser', 'vscode/runCommand', 'vscode/switchAgent', 'vscode/vscodeAPI', 'web', 'github/*', 'playwright/*', 'trivy-mcp/*', 'io.github.goreleaser/mcp/*', 'vscode.mermaid-chat-features/renderMermaidDiagram', 'ms-azuretools.vscode-containers/containerToolsConfig', 'github.vscode-pull-request-github/*']
 model: 'Cloaude Sonnet 4.5'
 ---
 You are the ENGINEERING DIRECTOR.
@@ -179,5 +179,3 @@ The task is not complete until ALL of the following pass with zero issues:
 - **MANDATORY DELEGATION**: Your first thought should always be "Which agent handles this?", not "How do I solve this?"
 - **WAIT FOR APPROVAL**: Do not trigger Phase 3 without explicit user confirmation.
 </constraints>
-
-````

.github/agents/Planning.agent.md

@@ -3,7 +3,7 @@ name: 'Planning'
 description: 'Principal Architect for technical planning and design decisions.'
 argument-hint: 'The feature or system to plan (e.g., "Design the architecture for Real-Time Logs")'
 tools:
-  ['execute/runNotebookCell', 'execute/testFailure', 'execute/getTerminalOutput', 'execute/awaitTerminal', 'execute/killTerminal', 'execute/runTask', 'execute/createAndRunTask', 'execute/runTests', 'execute/runInTerminal', 'read/getNotebookSummary', 'read/problems', 'read/readFile', 'read/readNotebookCellOutput', 'read/terminalSelection', 'read/terminalLastCommand', 'read/getTaskOutput', 'agent/runSubagent', 'edit/createDirectory', 'edit/createFile', 'edit/createJupyterNotebook', 'edit/editFiles', 'edit/editNotebook', 'search/changes', 'search/codebase', 'search/fileSearch', 'search/listDirectory', 'search/searchResults', 'search/textSearch', 'search/usages', 'search/searchSubagent', 'web/fetch', 'github/add_comment_to_pending_review', 'github/add_issue_comment', 'github/assign_copilot_to_issue', 'github/create_branch', 'github/create_or_update_file', 'github/create_pull_request', 'github/create_repository', 'github/delete_file', 'github/fork_repository', 'github/get_commit', 'github/get_file_contents', 'github/get_label', 'github/get_latest_release', 'github/get_me', 'github/get_release_by_tag', 'github/get_tag', 'github/get_team_members', 'github/get_teams', 'github/issue_read', 'github/issue_write', 'github/list_branches', 'github/list_commits', 'github/list_issue_types', 'github/list_issues', 'github/list_pull_requests', 'github/list_releases', 'github/list_tags', 'github/merge_pull_request', 'github/pull_request_read', 'github/pull_request_review_write', 'github/push_files', 'github/request_copilot_review', 'github/search_code', 'github/search_issues', 'github/search_pull_requests', 'github/search_repositories', 'github/search_users', 'github/sub_issue_write', 'github/update_pull_request', 'github/update_pull_request_branch', 'github/add_comment_to_pending_review', 'github/add_issue_comment', 'github/assign_copilot_to_issue', 'github/create_branch', 'github/create_or_update_file', 'github/create_pull_request', 'github/create_repository', 'github/delete_file', 'github/fork_repository', 'github/get_commit', 'github/get_file_contents', 'github/get_label', 'github/get_latest_release', 'github/get_me', 'github/get_release_by_tag', 'github/get_tag', 'github/get_team_members', 'github/get_teams', 'github/issue_read', 'github/issue_write', 'github/list_branches', 'github/list_commits', 'github/list_issue_types', 'github/list_issues', 'github/list_pull_requests', 'github/list_releases', 'github/list_tags', 'github/merge_pull_request', 'github/pull_request_read', 'github/pull_request_review_write', 'github/push_files', 'github/request_copilot_review', 'github/search_code', 'github/search_issues', 'github/search_pull_requests', 'github/search_repositories', 'github/search_users', 'github/sub_issue_write', 'github/update_pull_request', 'github/update_pull_request_branch', 'github/add_comment_to_pending_review', 'github/add_issue_comment', 'github/assign_copilot_to_issue', 'github/create_branch', 'github/create_or_update_file', 'github/create_pull_request', 'github/create_repository', 'github/delete_file', 'github/fork_repository', 'github/get_commit', 'github/get_file_contents', 'github/get_label', 'github/get_latest_release', 'github/get_me', 'github/get_release_by_tag', 'github/get_tag', 'github/get_team_members', 'github/get_teams', 'github/issue_read', 'github/issue_write', 'github/list_branches', 'github/list_commits', 'github/list_issue_types', 'github/list_issues', 'github/list_pull_requests', 'github/list_releases', 'github/list_tags', 'github/merge_pull_request', 'github/pull_request_read', 'github/pull_request_review_write', 'github/push_files', 'github/request_copilot_review', 'github/search_code', 'github/search_issues', 'github/search_pull_requests', 'github/search_repositories', 'github/search_users', 'github/sub_issue_write', 'github/update_pull_request', 'github/update_pull_request_branch', 'vscode.mermaid-chat-features/renderMermaidDiagram', 'todo']
+  ['agent', 'execute', 'read', 'search', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'todo', 'web', 'vscode/openSimpleBrowser', 'vscode/runCommand', 'vscode/askQuestions', 'github/*', 'vscode.mermaid-chat-features/renderMermaidDiagram', 'github.vscode-pull-request-github/*']
 model: 'Cloaude Sonnet 4.5'
 mcp-servers:
   - github

.github/agents/Playwright_Dev.agent.md

@@ -3,7 +3,7 @@ name: 'Playwright Dev'
 description: 'E2E Testing Specialist for Playwright test automation.'
 argument-hint: 'The feature or flow to test (e.g., "Write E2E tests for the login flow")'
 tools:
-  ['vscode', 'execute', 'read', 'agent', 'playwright/*', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'search', 'web', 'playwright/*', 'todo']
+  ['agent', 'execute', 'read', 'search', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'todo', 'web', 'playwright/*', 'vscode/runCommand']
 model: 'Cloaude Sonnet 4.5'
 ---
 You are a PLAYWRIGHT E2E TESTING SPECIALIST with expertise in:

.github/agents/QA_Security.agent.md

@@ -3,7 +3,7 @@ name: 'QA Security'
 description: 'Quality Assurance and Security Engineer for testing and vulnerability assessment.'
 argument-hint: 'The component or feature to test (e.g., "Run security scan on authentication endpoints")'
 tools:
-  ['vscode/extensions', 'vscode/getProjectSetupInfo', 'vscode/installExtension', 'vscode/openSimpleBrowser', 'vscode/runCommand', 'vscode/askQuestions', 'vscode/switchAgent', 'vscode/vscodeAPI', 'execute', 'read', 'agent', 'playwright/*', 'trivy-mcp/*', 'edit', 'search', 'web', 'playwright/*', 'todo']
+  ['agent', 'execute', 'read', 'search', 'edit/createDirectory', 'edit/createFile', 'edit/editFiles', 'edit/editNotebook', 'todo', 'web', 'playwright/*', 'trivy-mcp/*', 'vscode/extensions', 'vscode/getProjectSetupInfo', 'vscode/installExtension', 'vscode/openSimpleBrowser', 'vscode/runCommand', 'vscode/askQuestions', 'vscode/switchAgent', 'vscode/vscodeAPI']
 model: 'Cloaude Sonnet 4.5'
 mcp-servers:
   - trivy-mcp

.github/agents/Supervisor.agent.md

@@ -3,7 +3,7 @@ name: 'Supervisor'
 description: 'Code Review Lead for quality assurance and PR review.'
 argument-hint: 'The PR or code change to review (e.g., "Review PR #123 for security issues")'
 tools:
-  ['vscode/memory', 'execute', 'read', 'search', 'web', 'github/*', 'todo']
+  ['agent', 'execute', 'read', 'search', 'todo', 'web', 'github/*', 'github.vscode-pull-request-github/*']
 model: 'Cloaude Sonnet 4.5'
 mcp-servers:
   - github

.github/workflows/e2e-tests-split.yml

@@ -10,7 +10,7 @@
 #
 # See docs/implementation/E2E_TEST_REORGANIZATION_IMPLEMENTATION.md for full details
 
-name: 'E2E Tests (Split - Security + Sharded)'
+name: 'E2E Tests'
 
 on:
   workflow_run:

docs/plans/docs_workflow_update.md

@@ -0,0 +1,84 @@
+# Docs Workflow Update Plan
+
+## 1. Introduction
+The current documentation workflow only validates and deploys on pushes to `main`. This leaves other branches without validation of documentation changes, potentially leading to broken docs being merged. This plan outlines the updates to ensure documentation is built/validated on all relevant branches and PRs, while deployment remains restricted to `main`.
+
+## 2. Research Findings
+- **Current File**: `.github/workflows/docs.yml`
+- **Build Method**: Uses `npm install -g marked` to convert Markdown to HTML.
+- **Deploy Method**: Uses `actions/upload-pages-artifact` and `actions/deploy-pages`.
+- **Triggers**: Currently limited to `push: branches: [main]`.
+
+## 3. Technical Specifications
+
+### Workflow Triggers (`on`)
+The workflow triggers need to be expanded to cover:
+- Pull Requests targeting `main` or `development`.
+- Pushes to `main`, `development`, `feature/**`, and `hotfix/**`.
+
+```yaml
+on:
+  push:
+    branches:
+      - main
+      - development
+      - 'feature/**'
+      - 'hotfix/**'
+    paths:
+      - 'docs/**'
+      - 'README.md'
+      - '.github/workflows/docs.yml'
+  pull_request:
+    branches:
+      - main
+      - development
+    paths:
+      - 'docs/**'
+      - 'README.md'
+      - '.github/workflows/docs.yml'
+  workflow_dispatch:
+```
+
+### Concurrency
+Update concurrency to be scoped by branch. This allows parallel builds for different feature branches.
+Use `cancel-in-progress: true` for all branches except `main` to save resources on rapid fast-forward pushes, but ensure robust deployments for `main`.
+
+```yaml
+concurrency:
+  group: "pages-${{ github.ref }}"
+  cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}
+```
+
+### Job Constraints
+- **Job `build`**: Should run on all triggers. No changes needed to conditions.
+- **Job `deploy`**: Must be restricted to `main` branch pushes only.
+
+```yaml
+  deploy:
+    name: Deploy to GitHub Pages
+    if: github.ref == 'refs/heads/main' && github.event_name == 'push'
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    timeout-minutes: 5
+    needs: build
+    # ... steps ...
+```
+
+## 4. Implementation Tasks
+1.  **Modify `.github/workflows/docs.yml`**:
+    - Update `on` triggers.
+    - Update `concurrency` block with `group: "pages-${{ github.ref }}"` and conditional `cancel-in-progress`.
+    - Add `if` condition to `deploy` job.
+    - **Fix 404 Link Error**:
+        - Replace hardcoded `/charon/` paths in generated HTML navigation with dynamic repository name variable.
+        - Use `${{ github.event.repository.name }}` within the workflow to construct the base path, ensuring case-sensitivity compatibility (e.g., `Charon` vs `charon`).
+
+## 5. Acceptance Criteria
+- [ ] Pushing to a feature branch triggers the `build` job but skips `deploy`.
+- [ ] Multiple feature branch pushes run in parallel (checked via Actions tab).
+- [ ] Rapid pushes to the same feature branch cancel previous runs.
+- [ ] Opening a PR triggers the `build` job.
+- [ ] Pushing to `main` triggers both `build` and `deploy`.
+- [ ] Pushing to `main` does not cancel in-progress runs (safe deployment).

docs/tasks.md

@@ -0,0 +1,9 @@
+# Implementation Tasks
+
+## Phase 1: Workflow Updates
+
+- [ ] **Update Docs Workflow** <!-- id: 1 -->
+  - **Description**: Modify `.github/workflows/docs.yml` to trigger on all branches/PRs but deploy only on main.
+  - **Reference**: `docs/plans/docs_workflow_update.md`
+  - **Status**: Pending
+  - **Owner**: DevOps