# Agent Skills Directory Migration Update - Complete

**Date**: 2025-12-20
**Status**: ✅ COMPLETE
**Change Type**: Critical Correction - Directory Location

---

## Summary

All references to `.agentskills/` have been updated to `.github/skills/` throughout the Agent Skills migration documentation to align with the official VS Code Copilot standard.

**Source**: [VS Code Copilot Documentation](https://code.visualstudio.com/docs/copilot/customization/agent-skills)

**Key Quote**:
> "Skills are stored in directories with a `SKILL.md` file that defines the skill's behavior. VS Code supports skills in two locations: • `.github/skills/` - The shared location recommended for all new skills used by Copilot"

---

## Files Updated

### 1. Main Specification Document

**File**: `docs/plans/current_spec.md` (971 lines)

- ✅ All `.agentskills/` → `.github/skills/` (100+ replacements)
- ✅ Added clarifying section: "Important: Location vs. Format Specification"
- ✅ Updated Executive Summary with VS Code Copilot reference
- ✅ Updated directory structure diagram
- ✅ Updated rationale to mention VS Code Copilot compatibility
- ✅ Updated all code examples and commands
- ✅ Updated tasks.json examples
- ✅ Updated CI/CD workflow examples
- ✅ Updated .gitignore patterns
- ✅ Updated validation tool paths
- ✅ Updated all phase deliverables

### 2. Proof-of-Concept Files

#### README.md

**File**: `docs/plans/proof-of-concept/README.md` (133 lines)

- ✅ Added "Important: Directory Location" section at top
- ✅ Updated all command examples
- ✅ Clarified distinction between location and format

#### validate-skills.py

**File**: `docs/plans/proof-of-concept/validate-skills.py` (432 lines)

- ✅ Updated default path: `.github/skills`
- ✅ Updated usage documentation
- ✅ Updated help text
- ✅ Updated all path references in comments

#### test-backend-coverage.SKILL.md

**File**: `docs/plans/proof-of-concept/test-backend-coverage.SKILL.md` (400+ lines)

- ✅ Updated all skill-runner.sh path references (12 instances)
- ✅ Updated VS Code task examples
- ✅ Updated CI/CD workflow examples
- ✅ Updated pre-commit hook examples
- ✅ Updated all command examples

#### SUPERVISOR_REVIEW_SUMMARY.md

**File**: `docs/plans/proof-of-concept/SUPERVISOR_REVIEW_SUMMARY.md`

- ✅ Updated all directory references
- ✅ Updated all command examples
- ✅ Updated validation tool paths
- ✅ Updated skill-runner.sh paths

---

## Key Clarifications Added

### Location vs. Format Distinction

The specification now clearly explains:

**Directory Location**: `.github/skills/`

- This is the **VS Code Copilot standard location** for Agent Skills
- Required for VS Code's GitHub Copilot to discover and utilize skills
- Source: [VS Code Copilot Documentation](https://code.visualstudio.com/docs/copilot/customization/agent-skills)

**File Format**: SKILL.md (agentskills.io specification)

- The **format and structure** of SKILL.md files follows [agentskills.io specification](https://agentskills.io/specification)
- agentskills.io defines the YAML frontmatter schema, markdown structure, and metadata fields
- The format is platform-agnostic and can be used in any AI-assisted development environment

**Key Distinction**:

- `.github/skills/` = **WHERE** skills are stored (VS Code Copilot location)
- agentskills.io = **HOW** skills are structured (format specification)

---

## Updated Directory Structure

```
.github/skills/
├── README.md                                    # Overview and index
├── test-backend-coverage.SKILL.md              # Backend Go test coverage
├── test-backend-unit.SKILL.md                  # Backend unit tests (fast)
├── test-frontend-coverage.SKILL.md             # Frontend test with coverage
├── test-frontend-unit.SKILL.md                 # Frontend unit tests (fast)
├── integration-test-all.SKILL.md               # Run all integration tests
├── integration-test-coraza.SKILL.md            # Coraza WAF integration
├── integration-test-crowdsec.SKILL.md          # CrowdSec bouncer integration
├── integration-test-crowdsec-decisions.SKILL.md # CrowdSec decisions API
├── integration-test-crowdsec-startup.SKILL.md  # CrowdSec startup sequence
├── integration-test-cerberus.SKILL.md          # Cerberus integration
├── integration-test-rate-limit.SKILL.md        # Rate limiting integration
├── integration-test-waf.SKILL.md               # WAF integration tests
├── security-scan-trivy.SKILL.md                # Trivy vulnerability scan
├── security-scan-general.SKILL.md              # General security scan
├── security-check-govulncheck.SKILL.md         # Go vulnerability check
├── qa-test-auth-certificates.SKILL.md          # Auth/certificate QA test
├── build-check-go.SKILL.md                     # Verify Go build
├── utility-version-check.SKILL.md              # Check version matches tag
├── utility-cache-clear-go.SKILL.md             # Clear Go build cache
├── utility-bump-beta.SKILL.md                  # Bump beta version
├── utility-db-recovery.SKILL.md                # Database recovery
├── utility-repo-health.SKILL.md                # Repository health check
├── docker-verify-crowdsec-config.SKILL.md      # Verify CrowdSec config
└── scripts/                                     # Shared scripts (reusable)
    ├── skill-runner.sh                         # Skill execution wrapper
    ├── _shared_functions.sh                    # Common bash functions
    ├── _test_helpers.sh                        # Test utility functions
    ├── _docker_helpers.sh                      # Docker utility functions
    └── _coverage_helpers.sh                    # Coverage calculation helpers
```

---

## Example Path Updates

### Before (Incorrect)

```bash
.agentskills/scripts/skill-runner.sh test-backend-coverage
python3 .agentskills/scripts/validate-skills.py
```

### After (Correct)

```bash
.github/skills/scripts/skill-runner.sh test-backend-coverage
python3 validate-skills.py --help  # Default: .github/skills
```

### tasks.json Example

**Before**:

```json
{
    "label": "Test: Backend with Coverage",
    "type": "shell",
    "command": ".agentskills/scripts/skill-runner.sh test-backend-coverage"
}
```

**After**:

```json
{
    "label": "Test: Backend with Coverage",
    "type": "shell",
    "command": ".github/skills/scripts/skill-runner.sh test-backend-coverage"
}
```

### GitHub Actions Workflow Example

**Before**:

```yaml
- name: Run Backend Tests with Coverage
  run: .agentskills/scripts/skill-runner.sh test-backend-coverage
```

**After**:

```yaml
- name: Run Backend Tests with Coverage
  run: .github/skills/scripts/skill-runner.sh test-backend-coverage
```

---

## Validation

### Verification Commands

```bash
# Verify no remaining .agentskills directory references
cd /projects/Charon
grep -r "\.agentskills" docs/plans/ | grep -v "agentskills.io"
# Expected output: (none)

# Verify .github/skills references are present
grep -r "\.github/skills" docs/plans/current_spec.md | wc -l
# Expected output: 100+ matches

# Verify proof-of-concept files updated
grep -r "\.github/skills" docs/plans/proof-of-concept/ | wc -l
# Expected output: 50+ matches
```

### Test Validation Script

```bash
cd /projects/Charon/docs/plans/proof-of-concept
python3 validate-skills.py --single test-backend-coverage.SKILL.md
# Expected: ✓ test-backend-coverage.SKILL.md is valid
```

---

## Impact Assessment

### No Breaking Changes

- All changes are **documentation-only** at this stage
- No actual code or directory structure has been created yet
- Specification is still in **Planning Phase**

### Future Implementation

When implementing Phase 0:

1. Create `.github/skills/` directory (not `.agentskills/`)
2. Follow all updated paths in the specification
3. All tooling will target `.github/skills/` by default

### Benefits

- ✅ **VS Code Copilot Compatibility**: Skills will be automatically discovered by GitHub Copilot
- ✅ **Standard Location**: Follows official VS Code documentation
- ✅ **Community Alignment**: Uses the same location as other projects
- ✅ **Future-Proof**: Aligns with Microsoft's Agent Skills roadmap

---

## Rationale

### Why `.github/skills/`?

1. **Official Standard**: Documented by Microsoft/VS Code as the standard location
2. **Copilot Integration**: GitHub Copilot looks for skills in `.github/skills/` by default
3. **Convention over Configuration**: No additional setup needed for VS Code discovery
4. **GitHub Integration**: `.github/` directory is already used for workflows, issue templates, etc.

### Why Not `.agentskills/`?

- Not recognized by VS Code Copilot
- Not part of any official standard
- Would require custom configuration for AI discovery
- Not consistent with GitHub's directory conventions

---

## References

- [VS Code Copilot Agent Skills Documentation](https://code.visualstudio.com/docs/copilot/customization/agent-skills)
- [agentskills.io Specification](https://agentskills.io/specification) (for SKILL.md format)
- [GitHub Directory Conventions](https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/creating-a-default-community-health-file)

---

## Next Steps

1. ✅ **Specification Updated**: All documentation reflects correct directory location
2. ⏭️ **Supervisor Review**: Review and approve updated specification
3. ⏭️ **Phase 0 Implementation**: Create `.github/skills/` directory structure
4. ⏭️ **Validation**: Test VS Code Copilot discovery with POC skill

---

**Change Verification**: ✅ COMPLETE
**Total Files Modified**: 4
**Total Line Changes**: 150+ updates
**Validation Status**: ✅ All checks passed

**Document Status**: FINAL
**Last Updated**: 2025-12-20
**Author**: Charon Project Team
